PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC047263.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 293aa MW: 34163.6 Da PI: 6.6075

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC047263.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.2	6.7e-49	8	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lp+GfrFhPtd+elv++yL +k++++++++ +i+e+d+yk++Pw Lp+++ +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg dk++ + EcC047263.20 8 LPAGFRFHPTDDELVNDYLIRKCASHPISV-PFIAEIDLYKFDPWVLPEMALYGEKEWYFFSPRDRKYPNGSRPNRTAGTGYWKATGVDKPIGR--P 101 799************************9.88***********7666789*********************************98..7 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvfy g+ap+g+kt+W+mheyrl EcC047263.20 102 KTLGIKKALVFYVGKAPRGVKTNWIMHEYRL 132 78*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-59	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	57.712	8	158	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	9	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MKRAQLELPA GFRFHPTDDE LVNDYLIRKC ASHPISVPFI AEIDLYKFDP WVLPEMALYG 60 EKEWYFFSPR DRKYPNGSRP NRTAGTGYWK ATGVDKPIGR PKTLGIKKAL VFYVGKAPRG 120 VKTNWIMHEY RLANIDRSAR KKKNLRLDDW VLCRIYNKKG TIEKHFPSTH NETADFPEME 180 IKPQIVTPTA LNPYTSPQYA HSPMTTDHMY MDSSESVPKL HTESSCSEHA ESRDLAWEKE 240 VQSEAKWDDW EKALDFQFDS VDNFLDDAFA NEQFQLDQFS PLQDMSMYLQ KSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-79	4	164	11	174	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010027567.1	0.0	PREDICTED: NAC domain-containing protein 2
Swissprot	Q39013	1e-119	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A059AL30	0.0	A0A059AL30_EUCGR; Uncharacterized protein
STRING	XP_010027567.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-121	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]