PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047268.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 547aa    MW: 60646.1 Da    PI: 4.5859
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047268.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.4e-5391421128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+
  EcC047268.10   9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-EVIPEIDVCKWEPWDLPdlSVIKTDDPEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSR 104
                   699************************999.99**************96447888899**************************************9 PP

           NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +  l+g+kktLvfy+grapkge+t+W+mheyr+
  EcC047268.10 105 ksggaTAGLIGMKKTLVFYRGRAPKGERTHWIMHEYRA 142
                   765554455***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-615165IPR003441NAC domain
PROSITE profilePS5100557.9289165IPR003441NAC domain
PfamPF023651.1E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGVLEMEALP LGFRFRPTDE ELINHYLRLK INGRHSEVEV IPEIDVCKWE PWDLPDLSVI  60
KTDDPEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRKSGGAT AGLIGMKKTL  120
VFYRGRAPKG ERTHWIMHEY RATEQDLDGT GPGQAAYVLC RLFRKAEEKP EVVKYDEVEQ  180
TGLSPTSKSS PDEALSDVVP ETPVSNVQVK SQSDGIKRWL TDELDKMTPS VQMPVESCSN  240
SYIASDVEDG NTDGTPLEVN PLLKGGPKFY DLPCDPTDQA PYMDSPFACD FGNDLDGLLF  300
HDAGEQEITL SDLLVEVFNN QDDSCEESTS QKNSVGSEIP FDPPFYLSQP VLGVKDNVWY  360
DDLVDNNNWM DAVPSWGLSG AVASNNMAES TGESFNSSGG TPIKIRTRDS QVLPHSSDYG  420
AQGTAPRRLR LAVDRANQLP RSVKLEGADE GIRGTGSNGE EEVQSTAEES SVNHNDNTIV  480
GTNIKIRTRQ PRHQPGSENS IVQGIAPRRI RLQMNCQSGS TRDDEVKTSS FDEEVQSAPT  540
KVNQPAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-4411654165NO APICAL MERISTEM PROTEIN
1ut4_B8e-4411654165NO APICAL MERISTEM PROTEIN
1ut7_A8e-4411654165NO APICAL MERISTEM PROTEIN
1ut7_B8e-4411654165NO APICAL MERISTEM PROTEIN
4dul_A8e-4411654165NAC domain-containing protein 19
4dul_B8e-4411654165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056056.10.0PREDICTED: protein NTM1-like 9 isoform X2
TrEMBLA0A059C3680.0A0A059C368_EUCGR; Uncharacterized protein
STRINGXP_010056056.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-126NAC 014