PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047271.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 245aa    MW: 27397.5 Da    PI: 5.9972
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047271.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.5e-11177219446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      WT eE+e+++++ + +G+g+Wk+I++ +  ++t+ ++ s+ q 
     EcC047271.10 177 WTREEHERFLRGMNIYGKGDWKRISANVIFTKTPSELASHSQE 219
                      ****************************9889****9999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.764123IPR001005SANT/Myb domain
PROSITE profilePS5129410.865169225IPR017930Myb domain
SuperFamilySSF466892.08E-11172224IPR009057Homeodomain-like
SMARTSM007172.5E-7173223IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.7E-10173223IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.4E-8174217IPR009057Homeodomain-like
PfamPF002492.5E-8177218IPR001005SANT/Myb domain
CDDcd001678.26E-8177216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAAPTLPSLM ANFLLTTVAL GFRTHMHDAL SCLVRAFPFL LKIYSRKAAP KASVDHHDGG  60
GGGGGGGWTF EENKRFENAL AIFSLNEDDS SATFDGFPER AAPFFPEKSV QQIRSHLEAL  120
LHDLDLIESG EIPFPEQWTI EEDEGKRKRE DGDAGSSGSS LSLPLLSSSS ADRRHIWTRE  180
EHERFLRGMN IYGKGDWKRI SANVIFTKTP SELASHSQEH FSRRDRPTSP KRPRIIYDVD  240
SDDEP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030834.11e-140PREDICTED: transcription factor DIVARICATA
TrEMBLA0A059ARM51e-113A0A059ARM5_EUCGR; Uncharacterized protein
STRINGXP_010030834.11e-140(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2062545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-27MYB family protein