PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC047273.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 243aa MW: 26917.8 Da PI: 8.88

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC047273.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H EcC047273.10 71 FSCNYCQRKFYSSQALGGHQNAH 93 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.02E-6	67	98	No hit	No description
PROSITE profile	PS50157	11.427	71	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEFHKVGNRS RDDHRNADKQ LTNPDLVLDL SLSNKASDHA PKQEVTSIHC FEAHSPPNDV 60 PQDNETEARV FSCNYCQRKF YSSQALGGHQ NAHKRERTLA KRGQRIGSAT TANFSYPYSH 120 LNHYSSMASL PLHGSYFSRS PGIQVHSMIR KSPFFSSNNG SSHVFGHDGW FGQAIDQKPA 180 ARCVAQTNPH DGAALGSSSD SARLDGIQKF SSASKGIDEL WSNVGYLKSK PDEMKQIDLS 240 LKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010063554.1	0.0	PREDICTED: zinc finger protein 1
TrEMBL	A0A059BXE7	1e-180	A0A059BXE7_EUCGR; Uncharacterized protein
STRING	XP_010063554.1	1e-180	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1893	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	7e-37	C2H2 family protein