PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047285.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 178aa    MW: 19176.2 Da    PI: 4.6752
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047285.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-191363155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  sgy+GVr +k +g+Wv+e+r+p   g ++r++lg+f t+e+Aa+a++ a++ ++g
  EcC047285.20 13 SGYRGVRKRK-WGKWVSEVREP---GTKTRIWLGSFETPEMAAAAYDVAALHFRG 63
                  89*****999.*******9998...435***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-221372IPR016177DNA-binding domain
PfamPF008473.0E-121363IPR001471AP2/ERF domain
CDDcd000187.88E-221373No hitNo description
PROSITE profilePS5103223.4591471IPR001471AP2/ERF domain
SMARTSM003804.1E-351477IPR001471AP2/ERF domain
PRINTSPR003673.5E-101526IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-311572IPR001471AP2/ERF domain
PRINTSPR003673.5E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEDGRSSRGG TRSGYRGVRK RKWGKWVSEV REPGTKTRIW LGSFETPEMA AAAYDVAALH  60
FRGRGARLNF PELMDSLPRP AGSSPEDVRA AAHEAAARLR MAPAAAPESE DVGGSGGSGG  120
SDPAPLTVRL SPSQIQAINE STLDSPKMWM QMGEDLLAPD CSNNDVGEDD FEDSLWDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-151576668ATERF1
3gcc_A2e-151576668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062393.11e-125PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I22e-56ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A059BTG31e-124A0A059BTG3_EUCGR; Uncharacterized protein
STRINGXP_010062393.11e-125(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-47ERF family protein