PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047286.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 185aa    MW: 19463.7 Da    PI: 4.621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047286.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-192069255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +ykGVr++k +g+Wv+eIr+p   gk++r++lg++ ++e+Aa+a++ a++ l+g
  EcC047286.10 20 RYKGVRRRK-WGKWVSEIREP---GKKTRIWLGSYESPEMAAAAYDVAALHLRG 69
                  6*****998.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.60E-201979No hitNo description
PROSITE profilePS5103223.4992077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-302078IPR001471AP2/ERF domain
PfamPF008472.3E-132069IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-222078IPR016177DNA-binding domain
SMARTSM003803.8E-362083IPR001471AP2/ERF domain
PRINTSPR003673.1E-122132IPR001471AP2/ERF domain
PRINTSPR003673.1E-125979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MQAGGDQCGG DNDNAPCAAR YKGVRRRKWG KWVSEIREPG KKTRIWLGSY ESPEMAAAAY  60
DVAALHLRGP GAALNFPELV EALPKPAGSS SEAVQMAAQE AALRFRRAEG GPGASGGDGD  120
STGSRSSAPA RVGLSPSQIE AINEAPLDSP KMWMELGAGA DSAAAFDLGD MEVDQWGMLQ  180
QSIWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-152182668ATERF1
3gcc_A1e-152182668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127KGVRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064857.11e-112PREDICTED: ethylene-responsive transcription factor ERF022
TrEMBLA0A059BV841e-110A0A059BV84_EUCGR; Uncharacterized protein
STRINGXP_010064857.11e-111(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-47ERF family protein