PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047316.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 133aa    MW: 15057.4 Da    PI: 10.1862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047316.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.3e-065274123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C++C+k F r  nL+ H r H
  EcC047316.30 52 FVCEICNKGFQRDQNLQLHRRGH 74
                  89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-549102No hitNo description
Gene3DG3DSA:3.30.160.602.7E-65174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.3E-55274IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495274IPR007087Zinc finger, C2H2
SMARTSM003550.0175274IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM003558595125IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MVEMPNPSSQ EVSSSDLSAP PAKKKRSLPG MPDPEAEVIA LSPKTLLATN RFVCEICNKG  60
FQRDQNLQLH RRGHNLPWRL RQRDSNAEPP RKKVYVCPEP GCVHHSPARA LGDLTGIKKH  120
FCRKHGEKKW KCE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061336.11e-95PREDICTED: protein indeterminate-domain 1
SwissprotQ9LVQ71e-66IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A059BQ843e-94A0A059BQ84_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010061336.15e-95(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.15e-69C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]