PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC047357.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 117aa MW: 13234.3 Da PI: 10.0627

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC047357.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	8.1e-06	53	74	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+F++ L H++ H EcC047357.20 53 PCSVCHKRFRSTTALFGHMKIH 74 5*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.159	52	79	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.5E-6	53	85	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-4	54	74	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.9E-7	54	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MSCHMAKNIL RREPSLAIGN GLGKARRLGY CLRENPKKSW KFLGLMENAQ ENPCSVCHKR 60 FRSTTALFGH MKIHLSKDDE RCDWCVDRGK GSGSMKSCQD PARSIHDGER LNLSLSK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010034405.1	1e-72	PREDICTED: uncharacterized protein LOC104423639
STRING	XP_010034405.1	4e-72	(Eucalyptus grandis)