PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047357.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 299aa    MW: 33702.4 Da    PI: 8.3234
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047357.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.55.9e-0782103223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   +Cp C+k+F++   L +H++ H
  EcC047357.30  82 PCPVCDKRFRSMRALFSHMKIH 103
                   5*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-8933No hitNo description
PfamPF139125.2E-51035IPR007087Zinc finger, C2H2
PROSITE profilePS501578.7041138IPR007087Zinc finger, C2H2
SMARTSM003550.41133IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
SuperFamilySSF576672.39E-876103No hitNo description
PROSITE profilePS5015711.36581108IPR007087Zinc finger, C2H2
SMARTSM003558.7E-481103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.9E-683106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-583105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MATGENPKRV YPCRLCDRIY SSGPMLGGHM RCHMAMNLPE RELPLVIDNS SPDERRLGYC  60
LRENPKKTWK FSKLKESAQE KPCPVCDKRF RSMRALFSHM KIHSGKDDES GDRCEGRGKG  120
SRSMKFCQDH TRPIHDRERL NLSLLNEDHF VGSSKTKSDL LLIVLSDDET MRVTRRKRTL  180
RIEYDVDERT EGILFSAPKG SSYTSKAEQD PGTVGAISLM MLSQGETDFN SPGLSVKPFG  240
KGLTPNFFDV EKEKGVTETS ESNESHSSGY LKMEREGVEM EVPAGLLCGA RAVELRSLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034406.11e-106PREDICTED: uncharacterized protein LOC104423640
STRINGXP_010034401.11e-163(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-08C2H2-like zinc finger protein