PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047424.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 328aa    MW: 36017.1 Da    PI: 4.7651
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047424.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19121170255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   +++GVr+++ +g+W+AeIrdp     r  r++lg+++taeeAa  +++a+ +l+g
  EcC047424.10 121 KFRGVRRRP-WGKWAAEIRDPL----RrVRVWLGTYDTAEEAAMVYDHAAIQLRG 170
                   89*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.9E-30120178IPR001471AP2/ERF domain
PROSITE profilePS5103223.96121178IPR001471AP2/ERF domain
PfamPF008471.3E-12121170IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22121178IPR016177DNA-binding domain
SMARTSM003803.9E-37121184IPR001471AP2/ERF domain
CDDcd000188.47E-30121178No hitNo description
PRINTSPR003672.5E-10122133IPR001471AP2/ERF domain
PRINTSPR003672.5E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004527Molecular Functionexonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0009055Molecular Functionelectron carrier activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEATTCFVPP VKLTEHRTRA RLLSPEPADD PSIRPRVVRI SYTDGDATDS SSDEEDGPFE  60
CRRRRVKRFV HEIAIDPPCS RESHEVGKSR SLRSKLCGKS TGKPALRAGR CEMKSPAGVR  120
KFRGVRRRPW GKWAAEIRDP LRRVRVWLGT YDTAEEAAMV YDHAAIQLRG PDALTNFATP  180
PPLEVAAMSP PMPPAKGPGE ARSPTSVLRC LPDYAEDSQG SAGDAAKEEE RGDESCASAN  240
ASELAASFES LLPDDFFDFQ SSAPSLFDEY ASFGESMFKD DVVDAFMNPG EDLGFGFWSG  300
SGSSCWTVDD DHFQDIGDLF GSDHLLAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18120185466ATERF1
3gcc_A2e-18120185466ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053170.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLA0A059CGU50.0A0A059CGU5_EUCGR; Uncharacterized protein
STRINGXP_010053170.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-57cytokinin response factor 2