PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047492.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 171aa    MW: 19547.9 Da    PI: 6.8545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047492.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-19351234100
                   E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
            B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                   vl  sd+ +sg l +pkkfa+++g++   s    l+ +sg +W++++  r++ + + l++GW+ Fvk   +k g f+vF+++g+s f  +v ++++s
  EcC047492.20  35 VL--SDHIQSGKLAIPKKFARRYGNN--FSDLACLNVPSGDVWKMEV--RRQNDDFCLQDGWSYFVKHYLIKHGYFLVFRYEGNSVF--HVVICDRS 123
                   45..9999***************977..787999999**********..**********************************9***..****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-2325123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-2525123IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-1929121No hitNo description
PROSITE profilePS5086312.78830123IPR003340B3 DNA binding domain
SMARTSM010193.9E-1631123IPR003340B3 DNA binding domain
PfamPF023624.2E-1734122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGEGNACWSD SGPLHAQEDG QLLFEAETPH FFRIVLSDHI QSGKLAIPKK FARRYGNNFS  60
DLACLNVPSG DVWKMEVRRQ NDDFCLQDGW SYFVKHYLIK HGYFLVFRYE GNSVFHVVIC  120
DRSTSEIKYP MVSKENCGNS KPGDEHLLSP SDNDFQSCKC KRRESPSSTQ V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715841.15e-61PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A058ZRB63e-44A0A058ZRB6_EUCGR; Uncharacterized protein
STRINGXP_010026407.12e-60(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-25B3 family protein