PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC047617.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 262aa MW: 29684.3 Da PI: 6.3966

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC047617.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.8e-16	41	85	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ EcC047617.30 41 RGNISMDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNHWNTN 85 788899**************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.46E-20	21	93	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-10	21	47	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.077	22	35	IPR017877	Myb-like domain
PROSITE profile	PS51294	25.074	36	90	IPR017930	Myb domain
SMART	SM00717	1.4E-14	40	88	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-14	41	86	IPR001005	SANT/Myb domain
CDD	cd00167	4.39E-12	47	86	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.3E-20	48	86	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MTNQNIVLVI HIFGILFVGL KRCGKSCRLR WLNYLRPGIK RGNISMDEEE LIIRLHKLLG 60 NRWSLIAGRL PGRTDNEIKN HWNTNLSKKV QDQTHQNPVK RSNELEPRSE TSKEESPSRL 120 EPHPVIRTKA VRCTRVILPP PLMDQVASKA TSVRNSNSET SSYTSSRQSD LSSHFLADFN 180 IDDLLMSDEA QNLDSCFPLE GEKVNCYPSN FTLPAHDDAG CIRSEGLDRW RDNDEPFQPN 240 GSFDFNSLAS FLNSDDGCGL DE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-20	2	90	27	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269\|PubMed:15361138}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010049530.1	1e-179	PREDICTED: transcription factor TT2
Swissprot	Q9FJA2	1e-45	TT2_ARATH; Transcription factor TT2
TrEMBL	A0A059CUV1	1e-178	A0A059CUV1_EUCGR; Uncharacterized protein
STRING	XP_010049530.1	1e-179	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	5e-46	MYB family protein

Publications ? help Back to Top
Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Liu C,Jun JH,Dixon RA MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula. Plant Physiol., 2014. 165(4): p. 1424-1439 [PMID:24948832] Zhu Z, et al. Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation. J. Exp. Bot., 2015. 66(13): p. 3775-89 [PMID:25911741] Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao. BMC Plant Biol., 2015. 15: p. 160 [PMID:26109181] Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors. Plant Physiol. Biochem., 2016. 102: p. 70-9 [PMID:26913794] Li Y, et al. Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis. Sci Rep, 2016. 6: p. 30514 [PMID:27465838] Li C,Zhang B,Chen B,Ji L,Yu H Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds. Nat Commun, 2018. 9(1): p. 571 [PMID:29422671]