PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047704.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 575aa    MW: 64166.8 Da    PI: 6.9705
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047704.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.2e-352323222101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d  ++ ++sw  +++sfvv+d++ef+k+vLp+yFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F+kgkk+ll++ik
  EcC047704.10 232 FLRKTYEMVSDLGTDPVVSWGLSQDSFVVWDQQEFSKEVLPRYFKHSNFSSFIRQLNTYGFRKINPDR---------WEFANRGFQKGKKHLLKNIK 319
                   9********************888*****************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+ 
  EcC047704.10 320 RRL 322
                   *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-37228321IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-55228321IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-33228321IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-31232321IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-16232255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-16270282IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340271295IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-16283295IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MPSPLPVARC PFQVKLSLTV SRNPTITRAP DPPKKGKKNH ELELKLMTAF HGGASGCSPG  60
RANGSCPWFS ETFFRDSSLE LEKAKPFARS REEIASFAVL DGGDHGEIGS RSPLYSDLTR  120
TDSSRSQSKA RAGELGCCGS LSHSGPLPQV AIGDGKIEAG SPLHSCLTRP ELCSALAVQA  180
VKIKEELEEE EVATTADPRD AAVLSPSCSW QAAAYDVAKP MEDLGEVGPT PFLRKTYEMV  240
SDLGTDPVVS WGLSQDSFVV WDQQEFSKEV LPRYFKHSNF SSFIRQLNTY GFRKINPDRW  300
EFANRGFQKG KKHLLKNIKR RLNLNKHRKK SSSTVTSDYQ KAEKEAKLEM LKKEQEALKT  360
KILKLREEQD NLQHEIEQVA EWVRHADCRN QLLFLFLIKA AKSPNFLPNL TPKKKQKRDL  420
ETCDSSKKRE LLGPDAEATK CLLEAMDRMI QSPKVFQSPK VDCLKISDDL AQMERRPNSV  480
VPEHFGTFQM HNPWPSMDGE DFRVAQGQTP NQMTGASSSD LSSVFQGISE KLLKEDVVIG  540
ADVDNIEVED HLTLNDTGIY LELESLIEGM GTQVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2322532219130Heat shock factor protein 1
5d5v_B3e-2322532219130Heat shock factor protein 1
5d5v_D3e-2322532219130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314320LKNIKRR
2411417PKKKQKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049485.10.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CV880.0A0A059CV88_EUCGR; Uncharacterized protein
STRINGXP_010049485.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3454222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-47heat shock transcription factor A2