PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047903.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 195aa    MW: 22065.7 Da    PI: 7.7058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047903.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-17119168355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+ +AeIrdp++ng  +r +lg++ t++eAa a+++a+ +++g
  EcC047903.10 119 YRGVRRRP-WGKHAAEIRDPKKNG--ARRWLGTYQTPQEAALAYDRAAFAMRG 168
                   9*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-22118177IPR016177DNA-binding domain
PROSITE profilePS5103222.234118176IPR001471AP2/ERF domain
SMARTSM003801.0E-34118182IPR001471AP2/ERF domain
CDDcd000188.82E-29119178No hitNo description
PRINTSPR003671.0E-12119130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-30119177IPR001471AP2/ERF domain
PfamPF008479.0E-12119168IPR001471AP2/ERF domain
PRINTSPR003671.0E-12158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MYTASSTISE SDGALLECIR QHLLDDNDDF ETLGKIAENV RFRRPDSSSN TFPSPERTMS  60
FEANDDGMDV HHGPQDAVGF KSTRSLIEQP VVDYGHIEAN EAMPLVMREC DTQPGGGLYR  120
GVRRRPWGKH AAEIRDPKKN GARRWLGTYQ TPQEAALAYD RAAFAMRGTK ARLNFPHLIG  180
RDEVEPVRVT RKRRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26116183370ATERF1
3gcc_A2e-26116183370ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058507.11e-136PREDICTED: ethylene-responsive transcription factor 1-like
RefseqXP_010058508.11e-136PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A059C5A31e-81A0A059C5A3_EUCGR; Uncharacterized protein
STRINGXP_010058507.11e-135(Eucalyptus grandis)
STRINGXP_010058508.11e-135(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-39ethylene-responsive element binding factor 13