PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047907.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 472aa    MW: 52577.8 Da    PI: 7.1265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047907.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.99e-14291338254
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r +h e+Er+RR++++++f  Lr+++Pk      +K++Ka+ L  Av YIk+L
  EcC047907.20 291 RLNHVEAERQRREKLKQRFYALRSVVPKV-----TKMDKASLLSDAVSYIKEL 338
                   789*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-3724200IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.612289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-17291352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-19291358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-14291339No hitNo description
PfamPF000102.9E-11291338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-15295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00222405472No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEEITSPASS SFLVPLPQET SLDLQQYLHF LLQIRPDDWV YSIFWRPTRD DRGCLVLTWG  60
DGQFRGMKGL ATHNSNNQRV SKELGTPEGA DFRSSSNMDT KLVQNEVCDL ERYFIVSVTR  120
SYSSKESILG RALCSGTYIW LCGEDELGSY ECERVREASM TGIKSIVCIS TPHDTGVLEL  180
GSTKRLQEDW SLVHSAKSLF NSHFLSTGII PHVHGEHQSN GVLKEECSTL DGAGASRCDT  240
CPSDTFGPWG FKSDIKRAGA SHNITSPCKK AAITKMETDD AEPAQSPFPP RLNHVEAERQ  300
RREKLKQRFY ALRSVVPKVT KMDKASLLSD AVSYIKELRS RINELEGELT FLPQKPSLNK  360
VASRLGNETE KTLQVSKIGC SPSLNVVMGL SKMEVEVKVI GDEAVVRVRS PNRDHPAARL  420
MDALKELDLE VHHASLSSVK GTMLQDVVIR TPIGWASEER LRDAILARLC KV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-21172012193Transcription factor MYC3
4rqw_B1e-21172012193Transcription factor MYC3
4rs9_A1e-21172012193Transcription factor MYC3
4yz6_A1e-21172012193Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056012.20.0PREDICTED: transcription factor MYC2
TrEMBLA0A059C3130.0A0A059C313_EUCGR; Uncharacterized protein
STRINGXP_010056012.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-60bHLH family protein