PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047955.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 291aa    MW: 33473.1 Da    PI: 5.9796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047955.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00062158182123
                   EEETTTTEEESSHHHHHHHHHH..T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                   + C  C+k ++  ++++ H+++  H
  EcC047955.10 158 FYCDLCNKQYKLAMEFEAHLSSydH 182
                   78*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004434.3E-1761106IPR000467G-patch domain
PROSITE profilePS5017416.13563108IPR000467G-patch domain
PfamPF015856.8E-1564104IPR000467G-patch domain
SuperFamilySSF576671.44E-5156189No hitNo description
PfamPF121711.6E-5158185IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
VTATMNYRWR NSSAQDAGPD EGEKDAVDDD FREDFRLPIN HRPTENVDLD DVEQASLDTH  60
LSSSNIGFRL LQKMGWSGKG LGKDEQGITE PIKSGMRDPK LGIGKQEEDD YYTSEENIQR  120
RKLEIEIEET EEQLKKREVM AEREHKIQSE VKEIRKVFYC DLCNKQYKLA MEFEAHLSSY  180
DHNHRKRFKE MREMHGASSR DDRQKREQQR QEREMAKIAD ARKQKQQQEE PGSSPIPAPT  240
ISATALADQD QRKTLKFGFS SKSGTSKTSV KSALKKPKVV ASVFGNDSDE E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042465.10.0PREDICTED: G patch domain-containing protein 8 isoform X2
TrEMBLA0A059D4870.0A0A059D487_EUCGR; Uncharacterized protein
STRINGXP_010042458.10.0(Eucalyptus grandis)