PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048006.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 181aa    MW: 20088.6 Da    PI: 6.6782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048006.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-183180255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  EcC048006.20 31 IYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAHCLKG 80
                  69****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-123080IPR001471AP2/ERF domain
CDDcd000181.28E-273089No hitNo description
SuperFamilySSF541716.41E-213190IPR016177DNA-binding domain
PROSITE profilePS5103223.1823188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-303189IPR001471AP2/ERF domain
SMARTSM003803.1E-363194IPR001471AP2/ERF domain
PRINTSPR003674.6E-123243IPR001471AP2/ERF domain
PRINTSPR003674.6E-127090IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEQPPLAERA SPEAVSGETI RPTEGSTRHP IYRGVRKRRW GKWVSEIREP RKKSRIWLGS  60
FPVPEMAAKA YDVAAHCLKG RKAQLNFPAE VDDLPLPATC RARDIQLAAA EAARAVAANK  120
KGGGVDGDDF WAEIELPELV EDGERHWDAC LWAFIAEATW RDGDEKAATT SSSWHGHFAT  180
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1629921276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058125.11e-130PREDICTED: ethylene-responsive transcription factor ERF023
SwissprotQ1ECI23e-55ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A1U8NGG01e-66A0A1U8NGG0_GOSHI; ethylene-responsive transcription factor ERF023-like
TrEMBLA0A2P5VV619e-67A0A2P5VV61_GOSBA; Uncharacterized protein
STRINGXP_010058125.11e-129(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]