PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048006.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 612aa    MW: 67698.7 Da    PI: 6.4655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048006.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55.1e-13442488455
                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  EcC048006.30 442 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 488
                   799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.1E-5552240IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.67E-18437501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-14441492No hitNo description
Gene3DG3DSA:4.10.280.101.8E-17442500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MKIELGAGYG PWNDEEKAMV AAVLGTRAFD YLVSRSVSNE NLLMSIGSDE NMQDKLSNLV  60
DHPNSSNFSW NYAIFWQISR SKSGDWLLGW GDGSCREPKD GEESEATRIL NLRLEDEGQQ  120
RMRKRVLDKL HTVFGGSDED NYALGLDRVT DMEMFFLASM YFLFPSGEGG PGKCFASEKH  180
VWLTDALKSS SDYCVRSFLA KSAGIRTIVL VPTDVGVVEL GSVRSVPESS ELVQTIRSSF  240
STNSFMSVKP IAALPMTNEK KDENAPFSNS ALAGKGEAIS KIFGKELTAV NSPGHYREKL  300
AVRKMDSRQS WEPHHNGSKL PFSTPRNGTH DTSWAHAHGV KQLSPVEFYG SQTSASKLEE  360
RMNSGRNDFG LNRYPTPKQV QMQIDFTGAT SRPSVITRPF TADSEHSDVE ASCKEEQGGA  420
ANEKRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA  480
IAYINELQAK LKIMEADRER FGSTSRDASD VEVNATAEQS NQSPDVDIQA TAADEVVVRV  540
SCPLNSHPAS RVIQAFQEAQ VTVLDSKLST ANDTVFHTFL IKSQGSEQMT KEKLTAAFSR  600
ESNSLEPLSS VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29436498264Transcription factor MYC2
5gnj_B3e-29436498264Transcription factor MYC2
5gnj_E3e-29436498264Transcription factor MYC2
5gnj_F3e-29436498264Transcription factor MYC2
5gnj_G3e-29436498264Transcription factor MYC2
5gnj_I3e-29436498264Transcription factor MYC2
5gnj_M3e-29436498264Transcription factor MYC2
5gnj_N3e-29436498264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423431KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055004.10.0PREDICTED: transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A059C0Q70.0A0A059C0Q7_EUCGR; Uncharacterized protein
STRINGXP_010055004.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]