PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048056.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 427aa    MW: 47801.3 Da    PI: 4.5024
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048056.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.37.2e-24561736128
           NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
                   +++Ptde l+++yL++k  +k+l+l   i+e+d+y+ ePw++ +++ + ++  y F+k  k    g+r++r++ sg+Wk +   +++++++g+l g 
  EcC048056.30  56 KYRPTDECLITDYLQPKSMDKPLPL-GQIDECDLYSQEPWKIFNTTLELKQTFYVFTKLTK---MGSRNSRTAGSGTWKGQHP-TKIFNHGGALLGY 147
                   799**********************.78**************7433333445577777665...489************9876.567777******* PP

           NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                   kk++ f +g+ p++++ +W+m+e++l
  EcC048056.30 148 KKSFKFQEGDGPSATSGRWIMKEFSL 173
                   ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.19451227IPR003441NAC domain
SuperFamilySSF1019417.06E-2756183IPR003441NAC domain
PfamPF023659.1E-1456173IPR003441NAC domain
SuperFamilySSF1019417.06E-27215224IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006631Biological Processfatty acid metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0003857Molecular Function3-hydroxyacyl-CoA dehydrogenase activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDTGLAFSIA FLLCNRTEYT IYLACGLHNH SSSPLRNQQK PEKDTLFVTG MNSLAKYRPT  60
DECLITDYLQ PKSMDKPLPL GQIDECDLYS QEPWKIFNTT LELKQTFYVF TKLTKMGSRN  120
SRTAGSGTWK GQHPTKIFNH GGALLGYKKS FKFQEGDGPS ATSGRWIMKE FSLCNEGDSN  180
ERVMVPLNNL TLPYRPVSFH TVGWKSLTAW LNSVQQCDYV LCKIEYVRDK KSKDKEIAPV  240
QFDRQARRAR LDNDDLAFAG LSGDAIDARS VAPGPDIGNL TSPAFGDTGD TTYPAFDNGP  300
YADLLPLTVE DYTNYPYADL LPLTVEDDTN YLFEVDANYL FGSNPFANPL EDDANYLFGS  360
NPFANPLEDD TTAMLASTLG TLDNQTNTLG TPDNQTWGRT SLHQQRSVAE SQEQEVSLEW  420
PDQFFLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-155618022149NO APICAL MERISTEM PROTEIN
1ut4_B1e-155618022149NO APICAL MERISTEM PROTEIN
1ut7_A1e-155618022149NO APICAL MERISTEM PROTEIN
1ut7_B1e-155618022149NO APICAL MERISTEM PROTEIN
3swm_A1e-155618025152NAC domain-containing protein 19
3swm_B1e-155618025152NAC domain-containing protein 19
3swm_C1e-155618025152NAC domain-containing protein 19
3swm_D1e-155618025152NAC domain-containing protein 19
3swp_A1e-155618025152NAC domain-containing protein 19
3swp_B1e-155618025152NAC domain-containing protein 19
3swp_C1e-155618025152NAC domain-containing protein 19
3swp_D1e-155618025152NAC domain-containing protein 19
4dul_A1e-155618022149NAC domain-containing protein 19
4dul_B1e-155618022149NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050567.11e-154PREDICTED: NAC domain-containing protein 67
TrEMBLA0A059C1493e-86A0A059C149_EUCGR; Uncharacterized protein
STRINGXP_010050567.11e-153(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-18NAC family protein