PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048109.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 226aa    MW: 25206.5 Da    PI: 4.5485
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048109.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-17143448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +T+eE+e+++ ++++ G++ W+ Ia++++ gRt++++k++w++yl
     EcC048109.20  1 FTPEEEEIILSLHRLIGNK-WSQIAKHLP-GRTDNEIKNHWHSYL 43
                     8******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.481147IPR017930Myb domain
CDDcd001677.93E-14143No hitNo description
PfamPF002495.2E-16143IPR001005SANT/Myb domain
SuperFamilySSF466892.66E-15148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-23144IPR009057Homeodomain-like
SMARTSM007173.5E-12145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006810Biological Processtransport
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
FTPEEEEIIL SLHRLIGNKW SQIAKHLPGR TDNEIKNHWH SYLKKKVANK TESSSSSEAR  60
HDAQSQCTNS DNVESLPSPD QIPTNQNASV HAPSQEQKEK MSLDFPNGGP RSCLPKIFFA  120
EWLNQADQGY NVPTYGDAFD YRSNLQDSLV HDWCTSDFGN SYGGEYVGNE LSKGSASASV  180
SDMYSSRLKS EMDQVSGGGF YLDYFSGDDI CSQFDMGSDV NVMLYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1314762108B-MYB
1mbj_A8e-14147652MYB PROTO-ONCOGENE PROTEIN
1mbk_A8e-14147652MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035126.11e-160PREDICTED: transcription factor LAF1
TrEMBLA0A058ZYA51e-158A0A058ZYA5_EUCGR; Uncharacterized protein
STRINGXP_010035126.11e-159(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-19myb domain protein 19