PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC048255.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ERF

Protein Properties

Length: 220aa MW: 24411.7 Da PI: 9.3659

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC048255.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.8	6.3e-14	60	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GV + +g+Wv+e+r p++ + r++l +f t e+Aa+a++ a++ l+g EcC048255.10 60 PVYRGVLLRD-SGKWVCEVRKPRK---KSRIWLSTFPTVEMAARAHDVAALVLRG 110 68**9999.7**888743...6********************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.4E-11	60	110	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.25E-18	61	120	IPR016177	DNA-binding domain
PROSITE profile	PS51032	19.572	61	118	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-26	61	120	IPR001471	AP2/ERF domain
SMART	SM00380	8.2E-21	61	124	IPR001471	AP2/ERF domain
CDD	cd00018	2.99E-24	62	120	No hit	No description
PRINTS	PR00367	5.1E-6	62	73	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.1E-6	84	100	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MNPLSSYSHP NSFRFNFAEP PSDSRSATAL GNFSHKEVLL ASHHPKKRAG RKKFRETRHP 60 VYRGVLLRDS GKWVCEVRKP RKKSRIWLST FPTVEMAARA HDVAALVLRG WSACLNFADS 120 AWRLPVPASA DTKEIQKAAA RAAKAFQPVE SEDVMSGDKK KLRSEEGVLY DEEDIFGIPG 180 LLADMAEGML LSPPKCGGNI YGGEDDGNLD AYTSLWSYSI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001289653.1	1e-148	dehydration-responsive element-binding protein 1D-like
Swissprot	Q9FJ93	1e-67	DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBL	H6WBT4	1e-147	H6WBT4_EUCGR; Trancription factor CBF1
STRING	XP_010061519.1	1e-147	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM355	28	187

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51990.1	2e-65	C-repeat-binding factor 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guttikonda SK, et al. Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean. Mol. Biol. Rep., 2014. 41(12): p. 7995-8008 [PMID:25192890] Zhang T, et al. Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana. Plant Physiol. Biochem., 2015. 94: p. 153-64 [PMID:26093308] Carlow CE, et al. Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains. Plant Physiol. Biochem., 2017. 118: p. 306-319 [PMID:28675818] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]