PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048364.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 317aa    MW: 34867 Da    PI: 7.8196
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048364.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17e-09166211256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   rk+ +++keq   Lee F+++++++          l+L  rqV vWFqNrRa+ k
  EcC048364.20 166 RKKLRLSKEQSAFLEESFKEHHTLNP---------LNLRPRQVEVWFQNRRARTK 211
                   6788999*****************86.........9*****************98 PP
2HD-ZIP_I/II97.21.6e-31166247192
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                   +kk+rlskeq+++LEesF+e+++L+p         L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  EcC048364.20 166 RKKLRLSKEQSAFLEESFKEHHTLNP---------LNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTEENKRLHKELQELR-ALK 247
                   69**********************98.........9***************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-12158214IPR009057Homeodomain-like
SMARTSM003892.5E-6164217IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-8166211IPR009057Homeodomain-like
PfamPF000462.5E-6166211IPR001356Homeobox domain
CDDcd000863.57E-11166214No hitNo description
PROSITE profilePS5007110.446192213IPR001356Homeobox domain
PfamPF021832.8E-10213247IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.5E-20213256IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0030244Biological Processcellulose biosynthetic process
GO:0045489Biological Processpectin biosynthetic process
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MELGLSLGDA PFLEKEDLGF HLGLGSSFCG RPKEARDHGC GDVEDKSKRP RDAVALQLHL  60
FPSRSPSLLP QLNDNNGDSS DGLAEGKWLP SRLLATAAAA KTEVVDAGAE RLSSPNSGTS  120
SFHQLEFRSG SGGRSKTVDA LSLEGDNERA CSKGSDEYDE DNGLARKKLR LSKEQSAFLE  180
ESFKEHHTLN PLNLRPRQVE VWFQNRRART KLKQTEVDCE HLKRCCERLT EENKRLHKEL  240
QELRALKSSH HYSFMKHPVP ATTLSMCPSC ERISTSTAAA TNTNKMPASS SSLTPANPRT  300
ALIHQPLPNN TQAQAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205213RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058214.10.0PREDICTED: homeobox-leucine zipper protein HOX11
SwissprotP466657e-68HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A059DIP30.0A0A059DIP3_EUCGR; Uncharacterized protein
STRINGXP_010058214.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-67homeobox from Arabidopsis thaliana