PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048408.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 232aa    MW: 26579.6 Da    PI: 6.6338
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048408.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-1597142247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ l++ + + +G+g+W++I+r++ ++Rt+ q+ s+ qk+
     EcC048408.30  97 NPWTEEEHRLFLLGLQTYGKGDWRSISRHFVLTRTPTQVASHAQKF 142
                      69******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0024455IPR001005SANT/Myb domain
SuperFamilySSF466892.15E-9759IPR009057Homeodomain-like
PROSITE profilePS500905.947853IPR017877Myb-like domain
PROSITE profilePS5129418.09891147IPR017930Myb domain
SuperFamilySSF466891.79E-1693146IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-1594146IPR006447Myb domain, plants
SMARTSM007172.2E-1295145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-1295138IPR009057Homeodomain-like
PfamPF002492.8E-1297141IPR001005SANT/Myb domain
CDDcd001675.39E-1198142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003333Biological Processamino acid transmembrane transport
GO:0055114Biological Processoxidation-reduction process
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0015171Molecular Functionamino acid transmembrane transporter activity
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MYGRAAEWSR YEDKVFEHAL VAVAEDSPDR WQLIGNRLNR SASQVFEHYQ RLVEDIDAIE  60
SGRVEPPSYR DDHPASCGQI AFETKPRIKE AEKKKGNPWT EEEHRLFLLG LQTYGKGDWR  120
SISRHFVLTR TPTQVASHAQ KFYMRQMSLG KKERKRNSIH DITTVDTPPV PASVKDSFNP  180
PQAGDAQDDP SYDYPKANNF QQMQPCQPAP FMNQLLDQGG GSIGYENLSY FL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031294.11e-175PREDICTED: transcription factor DIVARICATA
TrEMBLA0A059A8Y91e-174A0A059A8Y9_EUCGR; Uncharacterized protein
STRINGXP_010031294.11e-174(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.15e-62MYB family protein