PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048499.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 73aa    MW: 8673.97 Da    PI: 10.9989
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048499.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.5e-131866146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46
                     +g+W++eEd++lv ++k++G  +W+  a+       gRt++++k++w++
     EcC048499.10 18 KGAWSAEEDQKLVAYIKRYGIWNWTHMAEPAAsrlSGRTDNEIKNYWNT 66
                     79******************99*****998888888***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-201371IPR009057Homeodomain-like
PROSITE profilePS5129416.9541372IPR017930Myb domain
SuperFamilySSF466893.24E-141371IPR009057Homeodomain-like
SMARTSM007171.6E-101770IPR001005SANT/Myb domain
PfamPF002492.1E-111866IPR001005SANT/Myb domain
CDDcd001672.47E-92068No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MARFPRVDKS NSKKTVKKGA WSAEEDQKLV AYIKRYGIWN WTHMAEPAAS RLSGRTDNEI  60
KNYWNTRLKK RFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054185.15e-38PREDICTED: transcription repressor MYB5
TrEMBLA0A059CB383e-36A0A059CB38_EUCGR; Uncharacterized protein
STRINGXP_010054185.12e-37(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-13MYB-like 102