PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048499.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 119aa    MW: 13965.1 Da    PI: 11.5881
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048499.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.4e-101760548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++eEd++l+ +++++G  +W+  a+  g+ Rt+k+c++r  ++l
     EcC048499.20 17 SPEEDQKLIAYIRRYGIWNWTQMAKPAGLARTGKSCRLRSMNHL 60
                     79**************99*********************88875 PP
2Myb_DNA-binding43.19.5e-1469108546
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      Tt E+e+++++++ lG++ W++Ia++   gRt++++k++w++
     EcC048499.20  69 TTKEEEIIIRLHRVLGNR-WAAIAARPH-GRTDNEIKNYWNT 108
                      899***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.515860IPR017877Myb-like domain
SuperFamilySSF466898.98E-2311106IPR009057Homeodomain-like
SMARTSM007170.00651262IPR001005SANT/Myb domain
PfamPF002495.6E-81760IPR001005SANT/Myb domain
CDDcd001679.22E-61760No hitNo description
Gene3DG3DSA:1.10.10.601.0E-171767IPR009057Homeodomain-like
PROSITE profilePS5129416.63761114IPR017930Myb domain
SMARTSM007171.5E-864112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-1968112IPR009057Homeodomain-like
PfamPF002492.5E-1169108IPR001005SANT/Myb domain
CDDcd001674.60E-869110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MKQVGEVEFG KKRTLGSPEE DQKLIAYIRR YGIWNWTQMA KPAGLARTGK SCRLRSMNHL  60
RPNIRRGNTT KEEEIIIRLH RVLGNRWAAI AARPHGRTDN EIKNYWNTRL KKHFPKSQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-241711211106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051856.13e-50PREDICTED: myb-related protein 308
RefseqXP_010051860.13e-50PREDICTED: transcription factor MYB82-like
RefseqXP_018728065.12e-50PREDICTED: transcription factor WER-like
SwissprotQ9LTC43e-37MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A218WNG11e-50A0A218WNG1_PUNGR; Uncharacterized protein
STRINGXP_010051856.11e-49(Eucalyptus grandis)
STRINGXP_010051860.11e-49(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-39myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]