PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048563.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 83aa    MW: 9697.29 Da    PI: 10.0394
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048563.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++v+++G g W+ ++ + g++R++k+c++rw++yl
     EcC048563.50  9 KGAWTEEEDVLLRKCVEKYGEGKWHQVPCRGGLNRCRKSCRLRWLNYL 56
                     79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.981460IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-22558IPR009057Homeodomain-like
SMARTSM007171.2E-12858IPR001005SANT/Myb domain
PfamPF002491.4E-15956IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-211083IPR009057Homeodomain-like
CDDcd001678.28E-101156No hitNo description
Gene3DG3DSA:1.10.10.607.6E-75983IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006438Biological Processvalyl-tRNA aminoacylation
GO:0008299Biological Processisoprenoid biosynthetic process
GO:0002161Molecular Functionaminoacyl-tRNA editing activity
GO:0003677Molecular FunctionDNA binding
GO:0004832Molecular Functionvaline-tRNA ligase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MEGAAGVRKG AWTEEEDVLL RKCVEKYGEG KWHQVPCRGG LNRCRKSCRL RWLNYLKPNI  60
KRGAFQDDEV DMIIRLHKLL GNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-13983477MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-13983477C-Myb DNA-Binding Domain
1msf_C9e-13983477C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018731301.11e-53PREDICTED: transcription factor MYB75 isoform X1
SwissprotQ9FNV98e-41MY113_ARATH; Transcription factor MYB113
TrEMBLA0A059BTU02e-52A0A059BTU0_EUCGR; Uncharacterized protein
STRINGXP_010064838.16e-53(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-43myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]