PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048655.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 197aa    MW: 22498.5 Da    PI: 7.9632
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048655.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1355.2e-42101402128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                   +pGfrFhPt++elv +yL +kv g++l + ++++e+d+yk+eP ++p       +   ++ ew+fFsk dkky+tg r nr+tk g+Wk tg + ++
  EcC048655.10  10 APGFRFHPTEHELVLYYLGRKVFGEPLYT-DAVPEIDVYKLEPYEIPGdrhfsaRQVRGDIEWFFFSKLDKKYETGMRVNRSTKLGFWKVTGPEYKI 105
                   69************************999.89**************944666542222455************************************ PP

           NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +  +++++g k+ Lv+y+g+++ g++tdWvmheyrl
  EcC048655.10 106 KY-GSRVIGEKRFLVYYDGHSKMGKRTDWVMHEYRL 140
                   *9.9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-468162IPR003441NAC domain
PROSITE profilePS5100546.6939162IPR003441NAC domain
PfamPF023651.1E-2211140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
APLNSHHIIA PGFRFHPTEH ELVLYYLGRK VFGEPLYTDA VPEIDVYKLE PYEIPGDRHF  60
SARQVRGDIE WFFFSKLDKK YETGMRVNRS TKLGFWKVTG PEYKIKYGSR VIGEKRFLVY  120
YDGHSKMGKR TDWVMHEYRL TDATLPVAHG KEVYAVYRLF WKGNSDPISG GPAPADAVEG  180
GEQVHGDDVA PASAAFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-34914015140Stress-induced transcription factor NAC1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010068842.17e-91(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-51NAC domain containing protein 2