PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC048748.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 116aa MW: 13666.9 Da PI: 9.268

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC048748.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	74.1	2.7e-23	8	113	268	373
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 f +++a l +s+ r + r + grei+nv+ ceg er+er +t+++W+ r ++aGFk++pl+++ k + +++ + + + ++e+ +++++gW++ EcC048748.30 8 FSMFDAILNGDSRVRLVFKRDFHGREIMNVIVCEGLERVERPKTYKQWQVRHMSAGFKALPLDQELLKLFRGKMKESYHKDFALDEDGNWMLQGWRG 104 44555666669*****************************************************************888************ PP GRAS 365 rpLvsvSaW 373 r ++ S+W EcC048748.30 105 RIIYGSSCW 113 ******* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	14.918	1	94	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-21	8	113	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
SCSIFGFFSM FDAILNGDSR VRLVFKRDFH GREIMNVIVC EGLERVERPK TYKQWQVRHM 60 SAGFKALPLD QELLKLFRGK MKESYHKDFA LDEDGNWMLQ GWRGRIIYGS SCWVPI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043539.1	3e-60	PREDICTED: scarecrow-like protein 34
Swissprot	Q3EDH0	5e-43	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	A0A059D484	6e-59	A0A059D484_EUCGR; Uncharacterized protein
STRING	XP_010043539.1	1e-59	(Eucalyptus grandis)
STRING	XP_010046393.1	2e-60	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	2e-45	GRAS family protein