PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048798.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 224aa    MW: 25106.4 Da    PI: 4.2886
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048798.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-1012352247
                     T-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                     + W++Ia++++ gRt++++k++w+++
     EcC048798.10 12 R-WSKIASHLP-GRTDNEIKNHWNTH 35
                     4.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.098140IPR017930Myb domain
SuperFamilySSF466891.64E-101045IPR009057Homeodomain-like
PfamPF002493.4E-81135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-151153IPR009057Homeodomain-like
CDDcd001671.51E-81136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MFMGQFLRCC NRWSKIASHL PGRTDNEIKN HWNTHIKKKL KKMGIDPLTH KPLVTNNDNT  60
TDQQPHQAAQ THPQESTDPE PTLSSSTNDA SSQTDHNKVD LESPPTVTES KEEERSTLDD  120
AMEAINSFLC SDDVPLIDPS EILVPSSSSS SSSYSTSPSS SWEDNNIFEN LHLPFMDWPP  180
GDFCEDNSSN HGFGFWKDED FSWDMLINAD PVLDQTSASY TGLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062267.11e-133PREDICTED: protein ODORANT1
TrEMBLA0A059BTW51e-132A0A059BTW5_EUCGR; Uncharacterized protein
STRINGXP_010062267.11e-133(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2200124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.15e-28myb domain protein 43