PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048805.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 704aa    MW: 76558.7 Da    PI: 6.3279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048805.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07277297526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   +C++f++ G C++Gd C +aHg
  EcC048805.10 277 PCPDFRK-GACRRGDMCEYAHG 297
                   8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.209.4E-179138IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-1545136IPR020683Ankyrin repeat-containing domain
SMARTSM002480.125787IPR002110Ankyrin repeat
PROSITE profilePS5029716.91857164IPR020683Ankyrin repeat-containing domain
PfamPF127967.8E-857125IPR020683Ankyrin repeat-containing domain
CDDcd002046.10E-1359135No hitNo description
SMARTSM002480.00692124IPR002110Ankyrin repeat
PROSITE profilePS5008811.0692127IPR002110Ankyrin repeat
SMARTSM003564.0E-6272298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4277299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582277299IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5277297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4305335IPR000571Zinc finger, CCCH-type
SMARTSM0035627307330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006855Biological Processdrug transmembrane transport
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MSQLTIQTED TFASLLELAA NNDTESFSRC VERDPSSVDE IGYWYGRQKG SKQMVNMQRT  60
PLMVAATYGS VDVMRLILCL SDADVNRTCS TDKITALHCA ASGGAVNAVD AVRLLLSAGA  120
DPSLADANGQ RPVDVIVVPP KLLSIKFALE ELLSTEGSVN EHNLRVSVAT SNSTSPPLSS  180
SPDNGSPASA NCSSPKNSKL SDAPVLYASE KKEYPVDPSL PDIKNSIYST DEFRMYSFKV  240
RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD FRKGACRRGD MCEYAHGVFE  300
CWLHPAQYRT RLCKDGTNCA RRVCFFAHTE QELRPLYVST GSAVPSPRSS TSGAAAMDFA  360
AAMSLLPGSP SSVSIMSPSP FTPPMSPSAN GISHPSVAWP QQNVPTLHLP GSNLQSSRLR  420
SSLNARDIPQ EDFDLLSDYD VQQQQLLNEF SVLSQQSMGA NSLNRSGRLK TLTPSNLDDL  480
FSAESSSPRY ADQALASAVF SPTHKSAVIN QFQQQQQSML SPINTTFSPK SVDHPLLQAS  540
FGVQSGRMSP RNMDPISPMS SRVSMLAQRE KQQQQLRSLS SRELGSNSAA IVGSPVGSWS  600
KWGATNGKPD WAVSADELGK LRRSNSFELG NNGEEPDLSW VQSLVKESPT EMKEKLSSTL  660
SGVPAPATSS EVPSISSQME SVDHEVLGAW LQQMQLDPLV AQQN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057404.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A059DIW60.0A0A059DIW6_EUCGR; Uncharacterized protein
STRINGXP_010057404.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]