PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048908.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 262aa    MW: 29210.2 Da    PI: 7.581
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048908.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041126148123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C +C k+F ++  L  H++ H
  EcC048908.30 126 FECRYCAKMFANSQALGGHQNAH 148
                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-6123153No hitNo description
Gene3DG3DSA:3.30.160.602.6E-4124152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.759126153IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010090Biological Processtrichome morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
IIMSGPSVSN LIPPKWDVGV GLNSGAFGTD DSSSCVQKQQ KKKVKLFGFD LTTIAPRNNR  60
DEEEDTPKSD LMERDDHESM NSSNTVPSSS IFDNKTPLAN GSNDNKRSSP VLTSDPHHDG  120
QAKKLFECRY CAKMFANSQA LGGHQNAHKK ERMRKKKLQL QARRRASLNS YLQAYHSHYY  180
CDSTGVVDFR GSSDDQCYLD SSSSYVYDLD DQFALSHQEP QISFGNMTDH RGGLSCGGST  240
RVQNWHAPAV LPADTGYYQR EK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154164KKKLQLQARRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724656.11e-105PREDICTED: zinc finger protein GIS-like
TrEMBLA0A059D7P81e-103A0A059D7P8_EUCGR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-09zinc finger protein 3