PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049015.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 353aa    MW: 38747.8 Da    PI: 6.3933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049015.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-142467146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
     EcC049015.10 24 RGAFSQDEEDLIIELHAALGNK-WSQIAANLP-GRTDNEIKNLWNS 67
                     89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.228118IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-10429IPR009057Homeodomain-like
SuperFamilySSF466892.27E-20577IPR009057Homeodomain-like
PROSITE profilePS5129425.1421973IPR017930Myb domain
SMARTSM007178.6E-132371IPR001005SANT/Myb domain
PfamPF002491.4E-132468IPR001005SANT/Myb domain
CDDcd001672.79E-92666No hitNo description
Gene3DG3DSA:1.10.10.602.7E-203074IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000413Biological Processprotein peptidyl-prolyl isomerization
GO:0006457Biological Processprotein folding
GO:0003677Molecular FunctionDNA binding
GO:0003755Molecular Functionpeptidyl-prolyl cis-trans isomerase activity
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
AGLQRCGKSC RLRWINYLRP DLKRGAFSQD EEDLIIELHA ALGNKWSQIA ANLPGRTDNE  60
IKNLWNSCLK KKLRQRGIDP VSHRPLSEVE NSDDKDATSG QTQDKVSRGS VELLSQLNPQ  120
FSSSKTARSS KNSNLMAPTL SKDTVADGFV SNHQENSMMN SCSSDFVDNF SLQQLNYSSS  180
DSRFSNLCFT QTGRALGNTI FSDFNSNVIS AISPTSSNSL FPTASMGFNF KPSNAVPSAN  240
STSSASTGTA DFHNSGSYFG NSLVSWGLLA DCGSPDKEGS TSIHPLEVHQ PGDFKWAAEY  300
LQNPLFMAAT LQNQAQEQSN LYNQIKPETQ FPPDHSTTSC GIIYRDMNPW TIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2157340108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874LKKKLRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045543.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A059DCZ10.0A0A059DCZ1_EUCGR; Uncharacterized protein
STRINGXP_010045543.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.35e-56myb domain protein 55