PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049087.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 515aa    MW: 56038.1 Da    PI: 6.9265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049087.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-113513901155
                   HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   rRRdriN+++  L+ellP++      K++Ka++L +++eY+k Lq
  EcC049087.20 351 RRRDRINKRMRALQELLPNC-----DKVDKASVLDEVIEYLKTLQ 390
                   8******************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.19E-12337394No hitNo description
PROSITE profilePS5088813.738340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11347395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14351413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-9351390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13351398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006032Biological Processchitin catabolic process
GO:0007034Biological Processvacuolar transport
GO:0016998Biological Processcell wall macromolecule catabolic process
GO:0004568Molecular Functionchitinase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
PDREFVELVW ENGTIAMRGS SPPSRCIASR RSDYGKVAYK APDPGNRVKN PLPGDLYLRD  60
VAHRNGVDPS ARGNANDDDL AAPDDKNMTC AADAASKHGD ADHPVSSRNE SLFIRKFSCP  120
NETREGGNHC PPWSPMRQGR DSAQFVGLGL CPIPHPSPGD HCSSNAMVLR EPNYLGKPSN  180
ANFSFFLRQP VVLGANKRLA SELPMRLPTD EDLPRAKIKT DKRAGTGDAR QAPLTEPAAA  240
FGRRTDLVDD KAKPMFTDDK TSGNAFPDEY SQVLGGEDNS LRNRKSNDQC WDPSSTIAAT  300
AIDKTMLGER QPCDPTPVAS SSVCSREASN HVAGPLKRKH EDSESIYPGE RRRDRINKRM  360
RALQELLPNC DKVDKASVLD EVIEYLKTLQ GQLQIMSTRS PLFMPPMMLA SGVHNMHAPH  420
MRQFPLGMGM RMGAGADCGP FQLLIPPLSG ATSLPQSNGT GIPMFGVQPI PYLPFMPTLT  480
QPIPAVDVSG TTTAFEHGES ADPSGNCDGI QNKEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045552.10.0PREDICTED: transcription factor PIL1
TrEMBLA0A059DEG00.0A0A059DEG0_EUCGR; Uncharacterized protein
STRINGXP_010045552.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3455622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.14e-22phytochrome interacting factor 3-like 1