PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049210.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 559aa    MW: 61110.1 Da    PI: 5.4445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049210.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-174087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++rw ++l
     EcC049210.20 40 KGPWTSAEDAILVDYVKKHGEGNWNAVQKFSGLSRCGKSCRLRWANHL 87
                     79******************************************9986 PP
2Myb_DNA-binding50.93.6e-1693136146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ l+v++++++G++ W++ a++++ gRt++++k++w++
     EcC049210.20  93 KGAFSAEEERLIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 136
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3973587IPR017930Myb domain
SuperFamilySSF466892.4E-3039134IPR009057Homeodomain-like
SMARTSM007176.8E-153989IPR001005SANT/Myb domain
PfamPF002495.4E-154087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-234195IPR009057Homeodomain-like
CDDcd001672.88E-114287No hitNo description
PROSITE profilePS5129425.81388142IPR017930Myb domain
SMARTSM007171.3E-1692140IPR001005SANT/Myb domain
PfamPF002495.7E-1593136IPR001005SANT/Myb domain
CDDcd001674.93E-1295136No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2496141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0008536Molecular FunctionRan GTPase binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MSHATFECDD GVVSQDQIGS PLMDKGKSGG SEDGGLVLKK GPWTSAEDAI LVDYVKKHGE  60
GNWNAVQKFS GLSRCGKSCR LRWANHLRPN LKKGAFSAEE ERLIVELHAK MGNKWARMAA  120
HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP AELCMQALQD GQQGQTFCRM TNGNKGHHEI  180
LQGSGYEIPD IVFDSFKANH SVLPYTPEIS DISATGLLMK GLASSQCGGL VQPTMPRHKR  240
LRQSASFYPG YGGIFKDAFP SMHQFEDDSC EKLSRAIVHP FPIDHDPDKN PLPFGVVQGS  300
HSFSNGNSST SEPSYEALKL ELPSLQYSEP DMGSWDTSSS PPTLLESVDN FILSPARTGK  360
AESESLSPRN SGLLDALVHE SKTMSSAKNN SPEKSTNSSA LTPGDISSST LDICKSEWEE  420
YGDPISPPDH SATSVFNGCT PLSTSGSSLD EQPHPDTFTA YNVKPEPFNL QSPESKHEIP  480
AHCDLMRPDA LLASDWFGLG SGSLKDQSTI SDSMVSLLGD DLCNDYKQSI GTCTSDQEWR  540
LNSCAWNNMP SACQMPELP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30381415107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067659.10.0PREDICTED: transcription factor GAMYB
RefseqXP_010067660.10.0PREDICTED: transcription factor GAMYB
RefseqXP_018715317.10.0PREDICTED: transcription factor GAMYB
TrEMBLA0A059BHZ00.0A0A059BHZ0_EUCGR; Uncharacterized protein
STRINGXP_010067659.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-122myb domain protein 33