PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049372.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 80aa    MW: 9071.13 Da    PI: 9.8657
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049372.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-101053344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   + + +a +q+ ++   +W +Ia+ +g g+++ ++k ++
     EcC049372.20 10 SWTPKQNKMFEKALAQYDKDtpdRWQKIAKAVG-GKSADEVKRHY 53
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-6455IPR009057Homeodomain-like
PROSITE profilePS5129310.438661IPR017884SANT domain
SMARTSM007179.5E-9759IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-14965IPR009057Homeodomain-like
CDDcd001676.85E-81053No hitNo description
PfamPF002491.7E-81053IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MASNSLTSSS WTPKQNKMFE KALAQYDKDT PDRWQKIAKA VGGKSADEVK RHYEILIEDV  60
KHIESGRVPF PNYRSSNNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-33176176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649137.13e-44PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A218WQ638e-47A0A218WQ63_PUNGR; Uncharacterized protein
STRINGXP_010029788.17e-54(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-37RAD-like 6