PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC049437.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 28043 Da PI: 8.8848

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC049437.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.9	7.4e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+ey++ EcC049437.30 9 KRIENKINRQVTFSKRRCGLLKKAHEISVLCDADVALIVFSTKGKLFEYAT 59 79***********************************************86 PP
2	K-box	101.7	9.8e-34	77	174	3	100
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +s+ ++++++ +++ e+akLk+++e Lq++q++l+Ge+L+sLslkeLq+Le+qL+++lk+iRs+Kn+l++e+i+elq+k k lqe+n++L kk++ EcC049437.30 77 ESQVLTNNAETNGNWTLEHAKLKARMEILQKNQKNLMGEELDSLSLKELQNLEHQLDTALKHIRSRKNQLMHESISELQRKDKVLQEQNNMLAKKVK 173 5555566778899**********************************************************************************98 PP K-box 100 e 100 e EcC049437.30 174 E 174 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.427	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.3E-39	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-32	2	89	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.67E-41	2	76	No hit	No description
PRINTS	PR00404	1.3E-30	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.7E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-30	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.7E-27	85	172	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	16.994	88	178	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016757	Molecular Function	transferase activity, transferring glycosyl groups
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRCGLLK KAHEISVLCD ADVALIVFST KGKLFEYATD 60 CCMERILERY ERYSYAESQV LTNNAETNGN WTLEHAKLKA RMEILQKNQK NLMGEELDSL 120 SLKELQNLEH QLDTALKHIR SRKNQLMHES ISELQRKDKV LQEQNNMLAK KVKEKEKALA 180 QQTQWDNPQD DGLTSSSVIL SQSLQPLNIG GPYHPSGIEE GAALGPPQHR NATLLPSWML 240 SHLQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-21	1	87	1	87	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-21	1	87	1	87	Myocyte-specific enhancer factor 2B
1tqe_R	1e-21	1	87	1	87	Myocyte-specific enhancer factor 2B
1tqe_S	1e-21	1	87	1	87	Myocyte-specific enhancer factor 2B
6byy_A	1e-21	1	87	1	87	MEF2 CHIMERA
6byy_B	1e-21	1	87	1	87	MEF2 CHIMERA
6byy_C	1e-21	1	87	1	87	MEF2 CHIMERA
6byy_D	1e-21	1	87	1	87	MEF2 CHIMERA
6c9l_A	1e-21	1	87	1	87	Myocyte-specific enhancer factor 2B
6c9l_B	1e-21	1	87	1	87	Myocyte-specific enhancer factor 2B
6c9l_C	1e-21	1	87	1	87	Myocyte-specific enhancer factor 2B
6c9l_D	1e-21	1	87	1	87	Myocyte-specific enhancer factor 2B
6c9l_E	1e-21	1	87	1	87	Myocyte-specific enhancer factor 2B
6c9l_F	1e-21	1	87	1	87	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037260.1	0.0	PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1
Swissprot	Q6E6S7	1e-114	AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBL	A0A059A5L8	1e-180	A0A059A5L8_EUCGR; Uncharacterized protein
STRING	XP_010037260.1	1e-180	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	6e-96	AGAMOUS-like 8

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]