PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC049642.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 190aa MW: 21232.7 Da PI: 8.0554

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC049642.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	71.9	1.6e-22	8	82	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++w+fF++ ++++a+g r++r++++gyWkatg+ v+s +++++g+kk+++fy g+ p+g+kt+W ++eyr+ EcC049642.10 8 EDREQWFFFAPLQEREARGGRPSRSMATGYWKATGSPGYVYS-SDKVIGVKKSMIFYMGKPPTGRKTHWKLNEYRA 82 45679***********************************.8999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	28.599	1	114	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-25	7	112	IPR003441	NAC domain
Pfam	PF02365	2.0E-9	12	81	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
LAGELCREDR EQWFFFAPLQ EREARGGRPS RSMATGYWKA TGSPGYVYSS DKVIGVKKSM 60 IFYMGKPPTG RKTHWKLNEY RAIELSPTNL DSTSSNISIL KLRREFALCR VYVVSGRSRA 120 FNRRRLEAVA RETTIQGSDN TASSEGGHEG GGCADASSSE AVAANAGSSH QWEMASLEDP 180 IWDWEQLDWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-19	11	112	71	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-19	11	112	71	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-19	11	112	71	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-19	11	112	71	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-19	11	112	74	166	NAC domain-containing protein 19
3swm_B	1e-19	11	112	74	166	NAC domain-containing protein 19
3swm_C	1e-19	11	112	74	166	NAC domain-containing protein 19
3swm_D	1e-19	11	112	74	166	NAC domain-containing protein 19
3swp_A	1e-19	11	112	74	166	NAC domain-containing protein 19
3swp_B	1e-19	11	112	74	166	NAC domain-containing protein 19
3swp_C	1e-19	11	112	74	166	NAC domain-containing protein 19
3swp_D	1e-19	11	112	74	166	NAC domain-containing protein 19
4dul_A	1e-19	11	112	71	163	NAC domain-containing protein 19
4dul_B	1e-19	11	112	71	163	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010030466.1	1e-125	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-56	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059AML1	1e-124	A0A059AML1_EUCGR; Uncharacterized protein
STRING	XP_010030466.1	1e-124	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	4e-62	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]