PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049715.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 395aa    MW: 43999 Da    PI: 9.1419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049715.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.11.9e-07214236123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C++Cgk F+r  nL+ H+r H
  EcC049715.30 214 HYCQICGKGFKRDANLRMHMRAH 236
                   68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.95E-6212239No hitNo description
PROSITE profilePS5015712.632214241IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-7214275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028214236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
SMARTSM0035564272305IPR015880Zinc finger, C2H2-like
SMARTSM0035528310332IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0007049Biological Processcell cycle
GO:0000786Cellular Componentnucleosome
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016538Molecular Functioncyclin-dependent protein serine/threonine kinase regulator activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MMLDLASCSF VNVSQGMQMI QGDYNQAGHV VASSSEGALP ASSAEAHLSS LLYNLSLLKD  60
KVHQVRSLVA ILVGSGRGQP ESTPLALASI GSLIQEIIGT ATSMMFFCQQ MTLLSPATPS  120
GTTTNNDNNN HPLVHEQSSL DWYGASSFIN YNGKNESQRS MSIVKNGGPD QEMRESPQVG  180
HQKDEKPRAH HTLSGNSYDI IELNAEDLLA KYTHYCQICG KGFKRDANLR MHMRAHGDEY  240
KTSAALTNPM KNTDSNRSKA NDEQERLRPK KYSCPQEGCR WNRKHPKFQP LKSMICIKNH  300
YKRSHCPKMF VCKRCNRKQF SVLSDLRTHE KHCGDAKWQC SCGTTFSRKD KLMGHVALFV  360
GHSPASSVDL MNPARLVQQK VAPTIMQLHG IAYDR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031421.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT241e-106STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A059ABF11e-167A0A059ABF1_EUCGR; Uncharacterized protein
STRINGXP_010031421.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-103C2H2 family protein