PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049762.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 243aa    MW: 28258.8 Da    PI: 6.5022
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049762.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W ++Ede+l   v+ lG ++W+ Ia+t g++R++k+c++rw +yl
     EcC049762.50 15 KGPWIEQEDEILTAFVTVLGERRWDYIAKTSGLKRSGKSCRLRWKNYL 62
                     79********************************************97 PP
2Myb_DNA-binding51.22.9e-1669113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+ ++eE+ ++++ ++q+G++ W++Ia++++ gRt++++k++w ++l
     EcC049762.50  69 GPISPEEERIIIKFHEQWGNK-WSRIAEKLP-GRTDNEIKNFWKTHL 113
                      6789*****************.*********.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1061062IPR017930Myb domain
SuperFamilySSF466895.62E-2713109IPR009057Homeodomain-like
SMARTSM007171.2E-71464IPR001005SANT/Myb domain
PfamPF002492.0E-111562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-201669IPR009057Homeodomain-like
CDDcd001671.01E-61762No hitNo description
PROSITE profilePS5129425.05963117IPR017930Myb domain
SMARTSM007174.2E-1667115IPR001005SANT/Myb domain
PfamPF002499.7E-1569113IPR001005SANT/Myb domain
CDDcd001672.91E-1170113No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMGNRGEARE EKLRKGPWIE QEDEILTAFV TVLGERRWDY IAKTSGLKRS GKSCRLRWKN  60
YLCPNLKHGP ISPEEERIII KFHEQWGNKW SRIAEKLPGR TDNEIKNFWK THLRKKVQSS  120
KQALIGAACD DPQSQMSNIN QDSSLSNVVY QCEQKQDCQD HFPIADSSKA TGSSLNVLSF  180
SDFSHLNSPY EIRLLDWMSE FGNDANEVNC VDCKHWGLCF CFPKWDFEEV DNSIWNCPGY  240
LWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-25131172105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-25131172105C-Myb DNA-Binding Domain
1msf_C4e-25131172105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050632.11e-180PREDICTED: transcription factor MYB59
TrEMBLA0A059DFK91e-147A0A059DFK9_EUCGR; Uncharacterized protein
STRINGXP_010050632.11e-179(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-61myb domain protein 27