PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049810.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 193aa    MW: 22573.5 Da    PI: 6.8794
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049810.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.15.2e-3451332128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                   p GfrFhPt+eelv++yL  kv++ + +   vi+e+ d y ++PwdLp+      +v ++  +w+f +++   ++++++ +r+t+sg Wk t +  +
  EcC049810.10   5 PLGFRFHPTEEELVNHYLMGKVQRYTDSW--VIPELeDFYAWDPWDLPRlypgilNVPSDGWDWFFICPSPYVAQNSEHVKRKTRSGHWKITCRRDD 99 
                   89**********************99777..899998***********6578776666677799********************************* PP

           NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++++ ++ l+g+k++Lvfykgr+    kt Wvmhey+l
  EcC049810.10 100 IKDRdTKVLIGTKRILVFYKGRT----KTGWVMHEYHL 133
                   ***956667**********7765....789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-373157IPR003441NAC domain
PROSITE profilePS5100537.7274157IPR003441NAC domain
PfamPF023657.2E-245133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDQFPLGFRF HPTEEELVNH YLMGKVQRYT DSWVIPELED FYAWDPWDLP RLYPGILNVP  60
SDGWDWFFIC PSPYVAQNSE HVKRKTRSGH WKITCRRDDI KDRDTKVLIG TKRILVFYKG  120
RTKTGWVMHE YHLNPELLSG YSSTLQIPYI LCRLKRKPSE SLDTFPSFGG VSSVTDNTPV  180
ASRHGSTEDT DQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-19416117169NO APICAL MERISTEM PROTEIN
1ut4_B2e-19416117169NO APICAL MERISTEM PROTEIN
1ut7_A2e-19416117169NO APICAL MERISTEM PROTEIN
1ut7_B2e-19416117169NO APICAL MERISTEM PROTEIN
4dul_A2e-19416117169NAC domain-containing protein 19
4dul_B2e-19416117169NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026029.11e-120PREDICTED: protein NTM1-like 9
TrEMBLA0A059AW671e-139A0A059AW67_EUCGR; Uncharacterized protein
STRINGXP_010026029.11e-119(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3456522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.25e-39NAC transcription factor-like 9