PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049819.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 242aa    MW: 27306.7 Da    PI: 8.0643
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049819.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.82.5e-4151362128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                   p GfrF Pt+eel+++yL+++++g+k  ++++vi+ ++i+++ePw+Lp+     +++++++w+fF++ ++++a+g r++r+ ++gyWkatg+   v+
  EcC049819.20   5 PTGFRFYPTEEELISFYLHNQLHGHKqDKIHRVIPVLHIFDTEPWNLPQlageLCREDREQWFFFAPMQEREARGGRPSRSLATGYWKATGSPSYVY 101
                   89********************99984666778***************656654445677************************************* PP

           NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   s++++++g+kk++vfy g+apkg+kt+W ++eyr+
  EcC049819.20 102 SSDNKVIGMKKSMVFYVGKAPKGRKTQWKLNEYRA 136
                   *********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-443167IPR003441NAC domain
PROSITE profilePS5100544.9114168IPR003441NAC domain
PfamPF023651.2E-205135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEEYPTGFRF YPTEEELISF YLHNQLHGHK QDKIHRVIPV LHIFDTEPWN LPQLAGELCR  60
EDREQWFFFA PMQEREARGG RPSRSLATGY WKATGSPSYV YSSDNKVIGM KKSMVFYVGK  120
APKGRKTQWK LNEYRAIELS PTNSNSSSSN ISIPKLKREF TLCRVYVVSG TSRAFDRRPL  180
EAVAGETTIQ VGGRAASSGG RGAGCADVSS SGIVAGDVGS SNQWETANLE EPMWDWDQLN  240
WL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-33516621166NAC domain-containing protein 19
3swm_B3e-33516621166NAC domain-containing protein 19
3swm_C3e-33516621166NAC domain-containing protein 19
3swm_D3e-33516621166NAC domain-containing protein 19
3swp_A3e-33516621166NAC domain-containing protein 19
3swp_B3e-33516621166NAC domain-containing protein 19
3swp_C3e-33516621166NAC domain-containing protein 19
3swp_D3e-33516621166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034219.10.0PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR34e-92NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A059ABX10.0A0A059ABX1_EUCGR; Uncharacterized protein
STRINGXP_010034219.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-91NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]