PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049859.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 217aa    MW: 24521 Da    PI: 10.1956
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049859.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-06103125123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++C+k F r  nL+ H r H
  EcC049859.10 103 FVCEICNKGFQRDQNLQLHRRGH 125
                   89*******************88 PP
2zf-C2H214.20.00012180202123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC++C+k++  +s+ k H + +
  EcC049859.10 180 WKCEKCSKRYAVQSDWKAHSKIC 202
                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-6102125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-7102125No hitNo description
PROSITE profilePS5015710.949103125IPR007087Zinc finger, C2H2
PfamPF121712.7E-5103125IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SMARTSM00355230145175IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-5168201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-7175200No hitNo description
SMARTSM00355130180200IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0016787Molecular Functionhydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MMKGLIFQQK PQQSGVEDNM SNLTSAASGD ATSASSGNRP TELSGPINNY SHQQYNFAPP  60
QPSTTQITPQ PPLKKKRNLP GNPDPDAEVI ALSPKTLMAT NRFVCEICNK GFQRDQNLQL  120
HRRGHNLPWK LKQRANKEVI RKKVYVCPES SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW  180
KCEKCSKRYA VQSDWKAHSK ICGTREYRCD CGTLFSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-22176217344Zinc finger protein JACKDAW
5b3h_F3e-22176217344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129142KLKQRANKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018719900.11e-160PREDICTED: protein indeterminate-domain 7-like
RefseqXP_018719901.11e-160PREDICTED: protein indeterminate-domain 7-like
RefseqXP_018719902.11e-160PREDICTED: protein indeterminate-domain 7-like
RefseqXP_018719903.11e-160PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-107IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A059AIB51e-160A0A059AIB5_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010034809.11e-151(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-100C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]