PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049934.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 217aa    MW: 24244.1 Da    PI: 9.9606
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049934.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-333188158
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                  ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers+ed ++v++tYeg+H+h
  EcC049934.10 31 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSEDSSTVVTTYEGQHTH 88
                  59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-351691IPR003657WRKY domain
SuperFamilySSF1182902.35E-292390IPR003657WRKY domain
PROSITE profilePS5081132.3742691IPR003657WRKY domain
SMARTSM007743.8E-393190IPR003657WRKY domain
PfamPF031068.1E-273288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009553Biological Processembryo sac development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0031048Biological Processchromatin silencing by small RNA
GO:0055114Biological Processoxidation-reduction process
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0004601Molecular Functionperoxidase activity
GO:0020037Molecular Functionheme binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MRVSLKPKKK NQKRQREPRF AFVTKSEVDH LDDGYRWRKY GQKAVKNSPY PRSYYRCTTA  60
GCGVKKRVER SSEDSSTVVT TYEGQHTHLS PATTKSGLGI IQSEAAASYC GGLPATAASF  120
LIPDHYNHQQ LQPLNVPYAF TSRPSNLSLL TSTTTTTTSE PHRFSPSFLR FYEEKPFGAV  180
PSSTSSSSGL DLARDHGLLQ DVIVPSQLRN KQEPKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-3024921078Probable WRKY transcription factor 4
2lex_A1e-3024921078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024807.11e-154PREDICTED: probable WRKY transcription factor 23
SwissprotO229009e-51WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A059B5121e-154A0A059B512_EUCGR; Uncharacterized protein
STRINGXP_010024807.11e-154(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.19e-53WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]