PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049955.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 433aa    MW: 48602.9 Da    PI: 8.9077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049955.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-066385123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C++C++ F r  nL+ H r+H
  EcC049955.20 63 YVCEICNQGFQRDQNLQMHRRRH 85
                  9*********************9 PP
2zf-C2H214.50.0001140162123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ C+k +  +s++k H++t+
  EcC049955.20 140 WVCERCSKGYAVQSDYKAHLKTC 162
                   58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.53E-56086No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976385IPR007087Zinc finger, C2H2
PfamPF128740.0216381No hitNo description
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355100104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-4131161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100140167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MIGNNAIISN PPSVPPPSDP FPDCLENNGN TTNKRKRRPA GTPDPDAEVV SLSPKTLLES  60
DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK LLKRETPAVR KRVFVCPEPS CLHHDPGHAL  120
GDLVGIKKHF RRKHSNHKQW VCERCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES  180
FIEHQDSCNM GRLGSDSHHN NLQPPCLSRT ASSPSPSSDT NLNTPSWPTT RTLALPKPAK  240
DATIFSNPIV NKPSPKKDHH DDLHNLELQL STSSNPTETN STNLPKRDEK YPPHLQLSIS  300
SLCTDCACER NSDCSRDQST NQLRMAMAEK AYADEARQVA KRQIEQAERE LANAKRMRQQ  360
AQAELQKAHA LKEHARKKMS SAILQITCQV CKQKLQAREL LRLAPGHESS LALSYMSSAI  420
TEGEVDNDIN RVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17136189356Zinc finger protein JACKDAW
5b3h_F1e-17136189356Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069464.10.0PREDICTED: protein SHOOT GRAVITROPISM 5
RefseqXP_018717493.10.0PREDICTED: protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-145IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A059AV350.0A0A059AV35_EUCGR; Uncharacterized protein
STRINGXP_010069464.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-136C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]