 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
EcC049955.30 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 285aa MW: 31507.2 Da PI: 10.33 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EcC049955.30 | genome | ECGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 329.7 | 7.9e-101 | 1 | 285 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalll 86
md d+s + rn+gyyep+a+++ lgl+lmss++e+ r++ + +++ +a+++rd m++ +rd++++ ++k+++ +
EcC049955.30 1 MDGDNSLNmRNWGYYEPTATMR-GLGLNLMSSVPEKPLFDsRSAAVMAASNGSAYHHRDlgasqavypMDY-MRDAWMSP--------REKFFNPMS 87
899999999*********9998.9**********998765366666555566789****************.9******9........678888888 PP
GAGA_bind 87 venslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
+++ ++++++t++++++q+++ p+l+ + e ++ + + +e+ e+ +kkr +k pk++k kk+k+ ++++k +++++
EcC049955.30 88 GNHN--------YSMIPETSTAHHMQMVQPPDLS-------KDERATQVEQVGIGNEIIENGPSKKRPGPKGPKSPKPKKAKRGPRAPKAETAPSV- 168
7775........89*************5444443.......334444444455677788888888899999************9988877777776. PP
GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280
+r+++ kk+++l +ng+++D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt +S+yPLP+stkrrgaRiagrKmS gafkk+LekLaaeGy++
EcC049955.30 169 -PRARTIKKTTELMINGINMDISCIPIPVCSCTGTPQQCYRWGSGGWQSACCTTGLSMYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFT 264
.89********************************************************************************************** PP
GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301
np+DL++hWAkHGtnkfvtir
EcC049955.30 265 NPIDLRTHWAKHGTNKFVTIR 285
********************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009590 | Biological Process | detection of gravity |
| GO:0009959 | Biological Process | negative gravitropism |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0010031 | Biological Process | circumnutation |
| GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process |
| GO:0048444 | Biological Process | floral organ morphogenesis |
| GO:2000012 | Biological Process | regulation of auxin polar transport |
| GO:2000904 | Biological Process | regulation of starch metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MDGDNSLNMR NWGYYEPTAT MRGLGLNLMS SVPEKPLFDS RSAAVMAASN GSAYHHRDLG 60
ASQAVYPMDY MRDAWMSPRE KFFNPMSGNH NYSMIPETST AHHMQMVQPP DLSKDERATQ 120
VEQVGIGNEI IENGPSKKRP GPKGPKSPKP KKAKRGPRAP KAETAPSVPR ARTIKKTTEL 180
MINGINMDIS CIPIPVCSCT GTPQQCYRWG SGGWQSACCT TGLSMYPLPM STKRRGARIA 240
GRKMSIGAFK KVLEKLAAEG YNFTNPIDLR THWAKHGTNK FVTIR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
