PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049981.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 223aa    MW: 23589.7 Da    PI: 9.326
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049981.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.98.2e-1689176186
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   +W++  + +Liea  e+  +l+rg+lk+++W+ev++++  ++ +    +s +qCk++++ ++k+yk +k+  + +     s++++fd+le
  EcC049981.10  89 CWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVADVVsGRENYakpPKSDIQCKNRIDTVKKKYKLEKAKIGAG--AGPSKWRFFDRLE 176
                   7*************************************84444522267889*********************98..45567******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2587178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEDDDEIRSP PTPGPPSASS SPSPPRAANG RITVTVPPGP GADAAAPPER PLPPPLLPPQ  60
NSLALALPIQ HVKAGAGGGG GGGGGREDCW SEGATAVLIE AWGERYLELS RGNLKQKHWK  120
EVADVVSGRE NYAKPPKSDI QCKNRIDTVK KKYKLEKAKI GAGAGPSKWR FFDRLEQLIG  180
PSAKYTSPAA ASAGHHEGPM MDGGGKTIEI LWTKLTNYQS VYN
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022888942.14e-68trihelix transcription factor ASIL2
SwissprotQ9LJG85e-62ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2R6QFA16e-68A0A2R6QFA1_ACTCH; Trihelix transcription factor
STRINGVIT_09s0002g00720.t014e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-51sequence-specific DNA binding transcription factors