PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050045.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 296aa    MW: 31989.8 Da    PI: 5.5839
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050045.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.6e-06447542
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                   C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  EcC050045.20  4 QCNVCEAAEASVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47
                  7******99*********************66899999999986 PP
2zf-B_box25.82.1e-085286135
      zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHk 35
                  s+++kC+ ++e    +fC +++ llC++C l++H 
  EcC050045.20 52 SQMPKCDICQETAGFFFCIEDRALLCRKCDLAIHT 86
                  689********98999******************4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.68147IPR000315B-box-type zinc finger
CDDcd000211.71E-8347No hitNo description
SMARTSM003362.2E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1155299IPR000315B-box-type zinc finger
SMARTSM003366.5E-145299IPR000315B-box-type zinc finger
PfamPF006431.1E-55394IPR000315B-box-type zinc finger
CDDcd000212.67E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006741Biological ProcessNADP biosynthetic process
GO:0019674Biological ProcessNAD metabolic process
GO:0005622Cellular Componentintracellular
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003951Molecular FunctionNAD+ kinase activity
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKIQCNVCEA AEASVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSTS ASQMPKCDIC  60
QETAGFFFCI EDRALLCRKC DLAIHTVNTY VSAHQRFLLT GVTVGLEPTE PHPSSSSINS  120
QPGEKISEIK SKSSSLSNGG NPLPSHNEYN DIPSVHTDGV GSLINAKLPF SGGSAAASMP  180
QWHLDELLGF SDFNQSFSFM GNGSSKADSG KLGDSDCSSI MRSSEETVDE CLGQVPDSYW  240
AVPQMSSPPT ASGLYWPKSA RRQLDAAVYV PDISSAPEND FLCQRNDRSI KRRRQS
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060760.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM28e-95BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A059BND80.0A0A059BND8_EUCGR; Uncharacterized protein
STRINGXP_010060760.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-95light-regulated zinc finger protein 1