PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC050352.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 235aa MW: 24788.1 Da PI: 7.6169

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC050352.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91	1.4e-28	2	101	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C+++Cvl+ ++ p++q +++ +++++FG+s +l+l++a+p+++r+++++sl++eA+ r+ +Pv Gavg++++++++++++++ EcC050352.10 2 SCNGCRVLRKGCSESCVLRSCLrwipsPEAQGNATLFLARFFGRSDLLSLVAAVPDSQRPALFQSLLFEACGRTVNPVGGAVGLLSSGNWHVCEAAV 98 6**********************999999**************************************************************99 PP DUF260 93 ela 95 e++ EcC050352.10 99 ETV 101 976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.285	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCVLR SCLRWIPSPE AQGNATLFLA RFFGRSDLLS LVAAVPDSQR 60 PALFQSLLFE ACGRTVNPVG GAVGLLSSGN WHVCEAAVET VLDGGVVQAL CGGAATLAFG 120 LDQSADSPFF SPSTCRGQSL QQSLQVPASI QVDVNLALPL YDPDLSFKEK LPGKRRGKRS 180 QVTNNWPTRT TTTTTAAATT RLSSEASEVI DPPSGYDHGG VGPGGQETKL LNLFV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059846.1	1e-168	PREDICTED: LOB domain-containing protein 37
TrEMBL	A0A059BK71	1e-167	A0A059BK71_EUCGR; Uncharacterized protein
STRING	XP_010059846.1	1e-168	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-56	LOB domain-containing protein 38