PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050385.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 232aa    MW: 25853.8 Da    PI: 6.6023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050385.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.41.7e-13117169155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt.aeeAakaaiaarkkleg 55 
                   + y+GVr+ + +g+++AeIrdp++ g  +r +lg++ t  eeAa a+++ + +++g
  EcC050385.10 117 CVYRGVRRWP-SGKYAAEIRDPKKSG--ARRWLGTYKTpQEEAALAYDRPAFAMRG 169
                   68****9999.7*********98765..**********888*******99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-8117169IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-18118179IPR016177DNA-binding domain
SMARTSM003809.1E-28118183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-25118178IPR001471AP2/ERF domain
PROSITE profilePS5103217.952118177IPR001471AP2/ERF domain
PRINTSPR003671.9E-9119130IPR001471AP2/ERF domain
CDDcd000181.09E-26119179No hitNo description
PRINTSPR003671.9E-9159179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MCTASSTISE SDVALLECIR QHLLNDDDFE TLAKIAENIR FHCPVSTSKT FPSLETTMSF  60
EANDDDVDIH HDPLKDAVGF ESASSFNEQP GVDRGYVEAN EAMPAVVHKY DARPGGCVYR  120
GVRRWPSGKY AAEIRDPKKS GARRWLGTYK TPQEEAALAY DRPAFAMRGT KARLNFPHSI  180
GRNEVEPERL TRKRHHSHEA GSGSLDPKPI KEDLTGFASD PKKLNGYVVS FQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21116184370ATERF1
3gcc_A6e-21116184370ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058506.11e-162PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A059C4E31e-108A0A059C4E3_EUCGR; Uncharacterized protein
STRINGXP_010058506.11e-162(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-31ethylene-responsive element binding factor 13