PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050386.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 304aa    MW: 33278.2 Da    PI: 9.8066
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050386.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
     EcC050386.20  5 KQKWTAEEEAALKAGVIKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.758158IPR017930Myb domain
SuperFamilySSF466893.3E-15270IPR009057Homeodomain-like
SMARTSM007176.6E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-13456IPR009057Homeodomain-like
PfamPF002494.8E-8555IPR001005SANT/Myb domain
CDDcd116608.88E-18656No hitNo description
SuperFamilySSF467856.53E-16118190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.6E-14118183IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.206120188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.6E-15120188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.3E-9125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0055085Biological Processtransmembrane transport
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0005215Molecular Functiontransporter activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWGSRDKAK LTVKRVHHVP RQEESSAAAR NAVQSDEEMV DMKDLSISGD ALHIDGPKRS  120
IVRLENLIID AINSLKEPSG SNKTAIATFI EEQYWAPPNF KRLLSAKLKY LMSIGKLVKV  180
KRKYRIAPGP GSLARRRTPS MFLSDGWKLP PKVDRNDDDD DVLTAAQVDL ELAKMRTMTP  240
EEAAAAAARA VAEAEAAIAA AEEAAKEAEA AEADAEAAQA FAEAAMKTMK GRNVPKVVVI  300
LFAF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028355.10.0PREDICTED: telomere repeat-binding factor 1 isoform X2
SwissprotQ8VWK45e-97TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A059AML80.0A0A059AML8_EUCGR; Uncharacterized protein
STRINGXP_010028354.11e-173(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-94telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]